No datasets match
  1. gage::bods
    Common gene set data collections
    csv| json| rda| rds
    matrix|19 x 4
  2. gage::carta.gs
    Common gene set data collections
    json| rda| rds
    list
  3. gage::egSymb
    Mapping between Entrez Gene IDs and official symbols
    csv| json| rda| rds
    matrix|40784 x 2
  4. gage::go.gs
    Common gene set data collections
    json| rda| rds
    list
  5. gage::gse16873
    GSE16873: a breast cancer microarray dataset
    csv| json| rda| rds
    matrix|11979 x 12
  6. gage::kegg.gs
    Common gene set data collections
    json| rda| rds
    list
  7. gage::kegg.gs.dise
    Common gene set data collections
    json| rda| rds
    list
  8. gage::khier
    Common gene set data collections
    csv| json| rda| rds
    matrix|552 x 3
  9. gage::korg
    Common gene set data collections
    csv| json| rda| rds
    matrix|8282 x 10
  10. gageData::bmp6
    A microarray dataset on BMP6 treated mesenchymal stem cells
    csv| json| rda| rds
    matrix|17663 x 4
  11. gageData::carta.hs
    Common gene set data collections
    json| rda| rds
    list
  12. gageData::go.sets.hs
    Common gene set data collections
    json| rda| rds
    list
  13. gageData::go.sets.mm
    Common gene set data collections
    json| rda| rds
    list
  14. gageData::go.sets.rn
    Common gene set data collections
    json| rda| rds
    list
  15. gageData::go.sets.sc
    Common gene set data collections
    json| rda| rds
    list
  16. gageData::go.subs.hs
    Common gene set data collections
    json| rda| rds
    list
  17. gageData::go.subs.mm
    Common gene set data collections
    json| rda| rds
    list
  18. gageData::go.subs.rn
    Common gene set data collections
    json| rda| rds
    list
  19. gageData::go.subs.sc
    Common gene set data collections
    json| rda| rds
    list
  20. gageData::gse16873.2
    GSE16873: a breast cancer microarray dataset
    csv| json| rda| rds
    matrix|11979 x 12
  21. gageData::gse16873.affyid
    GSE16873: a breast cancer microarray dataset
    csv| json| rda| rds
    matrix|19940 x 12
  22. gageData::gse16873.full
    GSE16873: a breast cancer microarray dataset
    csv| json| rda| rds
    matrix|11979 x 40
  23. gageData::hnrnp.cnts
    RNA-seq dataset on HNRNPC knockdown and control HeLa cells
    csv| json| rda| rds
    matrix|22932 x 8
  24. gageData::kegg.sets.hs
    Common gene set data collections
    json| rda| rds
    list
  25. gageData::kegg.sets.ko
    Common gene set data collections
    json| rda| rds
    list
  26. gageData::kegg.sets.mm
    Common gene set data collections
    json| rda| rds
    list
  27. gageData::kegg.sets.rn
    Common gene set data collections
    json| rda| rds
    list
  28. gageData::kegg.sets.sc
    Common gene set data collections
    json| rda| rds
    list
  29. gageData::orf2eg
    Common IDs used for budding yeast (Saccharomyces cerevisa) genes
    json| rda| rds
    character
  30. gageData::sc.gene
    Common IDs used for budding yeast (Saccharomyces cerevisa) genes
    csv| json| rda| rds
    matrix|6201 x 3
  31. gageData::sigmet.idx.hs
    Common gene set data collections
    json| rda| rds
    integer
  32. gageData::sigmet.idx.ko
    Common gene set data collections
    json| rda| rds
    integer
  33. gageData::sigmet.idx.mm
    Common gene set data collections
    json| rda| rds
    integer
  34. gageData::sigmet.idx.rn
    Common gene set data collections
    json| rda| rds
    integer
  35. gageData::sigmet.idx.sc
    Common gene set data collections
    json| rda| rds
    integer
  36. pathview::bods
    Mapping data on KEGG species code and corresponding Bioconductor gene annotation package
    csv| json| rda| rds
    matrix|19 x 4
  37. pathview::cpd.accs
    Mapping data between compound or gene IDs and KEGG accessions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30054 x 4
  38. pathview::cpd.names
    Mapping data between compound or gene IDs and KEGG accessions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12314 x 5
  39. pathview::cpd.simtypes
    Mapping data between compound or gene IDs and KEGG accessions
    json| rda| rds
    character
  40. pathview::demo.paths
    Data for demo purpose
    csv| json| rda| rds
    list
  41. pathview::gene.idtype.bods
    Mapping data between compound or gene IDs and KEGG accessions
    json| rda| rds
    list
  42. pathview::gene.idtype.list
    Mapping data between compound or gene IDs and KEGG accessions
    json| rda| rds
    character
  43. pathview::gse16873.d
    Data for demo purpose
    csv| json| rda| rds
    matrix|11979 x 6
  44. pathview::kegg.met
    Mapping data between compound or gene IDs and KEGG accessions
    csv| json| rda| rds
    matrix|694 x 3
  45. pathview::KEGGEdgeSubtype
    Internal functions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 11
  46. pathview::ko.ids
    Mapping data between compound or gene IDs and KEGG accessions
    json| rda| rds
    character
  47. pathview::korg
    Mapping data on KEGG species code and corresponding Bioconductor gene annotation package
    csv| json| rda| rds
    matrix|10718 x 10
  48. pathview::paths.hsa
    Data for demo purpose
    json| rda| rds
    character
  49. pathview::rn.list
    Mapping data between compound or gene IDs and KEGG accessions
    json| rda| rds
    list
  50. SBGNview::mapped.ids
    IDs mappable by SBGNview
    json| rda| rds
    list
  51. SBGNview::pathways.info
    Information of collected pathways
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5200 x 8
  52. SBGNview::pathways.stats
    Number of pathways collected
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 3
  53. SBGNview::SBGNhub.id.mapping.tables
    Mapping tables available in SBGNhub
    csv| json| rda| rds
    matrix|822 x 1
  54. SBGNview.data::cancer.ds
    A demo microarray dataset from a cancer study
    rda| rds
    SummarizedExperiment
  55. SBGNview.data::chebi_compound.name
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|285207 x 2
  56. SBGNview.data::chebi_kegg
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20692 x 2
  57. SBGNview.data::chebi_metacyc.SBGN
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|60659 x 2
  58. SBGNview.data::chebi_pathway.id
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|79911 x 2
  59. SBGNview.data::chebi_pathwayCommons
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|60425 x 2
  60. SBGNview.data::compound.name_kegg
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|61143 x 2
  61. SBGNview.data::compound.name_pathway.id
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|571283 x 2
  62. SBGNview.data::compound.name_pathwayCommons
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|298727 x 2
  63. SBGNview.data::ENZYME_pathway.id
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16601 x 2
  64. SBGNview.data::hsa_ENTREZID_pathwayCommons
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|384671 x 2
  65. SBGNview.data::hsa_KO_ENTREZID
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10446 x 3
  66. SBGNview.data::hsa_pathwayCommons_ENSEMBL
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|383983 x 2
  67. SBGNview.data::IFNg
    RNA-Seq result from a mouse IFNG knockout experiment
    rda| rds
    SummarizedExperiment
  68. SBGNview.data::kegg_pathwayCommons
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6448 x 2
  69. SBGNview.data::KO_pathway.id
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|47719 x 2
  70. SBGNview.data::KO_pathwayCommons
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|88148 x 2
  71. SBGNview.data::mmu_KO_ENSEMBL
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|11016 x 2
  72. SBGNview.data::mmu_KO_ENTREZID
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11105 x 3
  73. SBGNview.data::mmu_pathwayCommons_ENSEMBL
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|619656 x 2
  74. SBGNview.data::mmu_pathwayCommons_ENTREZID
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|628413 x 2
  75. SBGNview.data::pathway.completeness.cutoff.info
    Cutoffs of pathway completeness used for defining existance of pathway in a species
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3529 x 4
  76. SBGNview.data::pathway.species.pct_Mapped
    Pathway completeness in a species
    csv| xlsx| rda| rds
    data.frame|6939443 x 5
  77. SBGNview.data::pathwayCommons_SYMBOL
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|406940 x 3
  78. SBGNview.data::sbgn.xmls
    XML code of a SBGN-ML file
    csv| json| rda| rds
    list
  79. SBGNview.data::SYMBOL_pathway.id
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|252730 x 2